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Sample to answer visualization pipeline for low-cost point-of-care blood cell counting

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dc.contributor.author Smith, S
dc.contributor.author Naidoo, T
dc.contributor.author Davies, E
dc.contributor.author Fourie, L
dc.contributor.author Nxumalo, Z
dc.contributor.author Swart, H
dc.contributor.author Marais, P
dc.contributor.author Land, K
dc.contributor.author Roux, P
dc.date.accessioned 2015-08-19T10:43:39Z
dc.date.available 2015-08-19T10:43:39Z
dc.date.issued 2015-02
dc.identifier.citation Smith, S, Naidoo, T, Davies, E, Fourie, L, Nxumalo, Z, Swart, H, Marais, P, Land, K and Roux, P. 2015. In: PIE BiOS Optical Diagnostics and Sensing XV: Towards Point-of-Care Diagnostics, San Francisco, USA, 7- 12 February 2015 en_US
dc.identifier.uri http://spie.org/Publications/Proceedings/Paper/10.1117/12.2076751
dc.identifier.uri http://hdl.handle.net/10204/8047
dc.description PIE BiOS Optical Diagnostics and Sensing XV: Towards Point-of-Care Diagnostics, San Francisco, USA, 7- 12 February 2015. Due to copyright restrictions, the attached PDF file only contains the abstract of the full text item. For access to the full text item, please consult the publisher's website en_US
dc.description.abstract We present a visualization pipeline from sample to answer for point-of-care blood cell counting applications. Effective and low-cost point-of-care medical diagnostic tests provide developing countries and rural communities with accessible healthcare solutions, and can be particularly beneficial for blood cell count tests, which are often the starting point in the process of diagnosing a patient. The initial focus of this work is on total white and red blood cell counts, using a microfluidic cartridge for sample processing. Analysis of the processed samples has been implemented by means of two main optical visualization systems developed in-house: 1) a fluidic operation analysis system using high speed video data to determine volumes, mixing efficiency and flow rates, and 2) a microscopy analysis system to investigate homogeneity and concentration of blood cells. Fluidic parameters were derived from the optical flow as well as color-based segmentation of the different fluids using a hue-saturation-value (HSV) color space. Cell count estimates were obtained using automated microscopy analysis and were compared to a widely accepted manual method for cell counting using a hemocytometer. The results using the first iteration microfluidic device showed that the most simple – and thus low-cost – approach for microfluidic component implementation was not adequate as compared to techniques based on manual cell counting principles. An improved microfluidic design has been developed to incorporate enhanced mixing and metering components, which together with this work provides the foundation on which to successfully implement automated, rapid and low-cost blood cell counting tests. en_US
dc.language.iso en en_US
dc.publisher SPIE en_US
dc.relation.ispartofseries Workflow;14699
dc.subject Point-of-care en_US
dc.subject Microfluidics en_US
dc.subject Blood cell counting en_US
dc.subject Fluidic analysis en_US
dc.subject Visualization pipeline en_US
dc.title Sample to answer visualization pipeline for low-cost point-of-care blood cell counting en_US
dc.type Conference Presentation en_US
dc.identifier.apacitation Smith, S., Naidoo, T., Davies, E., Fourie, L., Nxumalo, Z., Swart, H., ... Roux, P. (2015). Sample to answer visualization pipeline for low-cost point-of-care blood cell counting. SPIE. http://hdl.handle.net/10204/8047 en_ZA
dc.identifier.chicagocitation Smith, S, T Naidoo, E Davies, L Fourie, Z Nxumalo, H Swart, P Marais, K Land, and P Roux. "Sample to answer visualization pipeline for low-cost point-of-care blood cell counting." (2015): http://hdl.handle.net/10204/8047 en_ZA
dc.identifier.vancouvercitation Smith S, Naidoo T, Davies E, Fourie L, Nxumalo Z, Swart H, et al, Sample to answer visualization pipeline for low-cost point-of-care blood cell counting; SPIE; 2015. http://hdl.handle.net/10204/8047 . en_ZA
dc.identifier.ris TY - Conference Presentation AU - Smith, S AU - Naidoo, T AU - Davies, E AU - Fourie, L AU - Nxumalo, Z AU - Swart, H AU - Marais, P AU - Land, K AU - Roux, P AB - We present a visualization pipeline from sample to answer for point-of-care blood cell counting applications. Effective and low-cost point-of-care medical diagnostic tests provide developing countries and rural communities with accessible healthcare solutions, and can be particularly beneficial for blood cell count tests, which are often the starting point in the process of diagnosing a patient. The initial focus of this work is on total white and red blood cell counts, using a microfluidic cartridge for sample processing. Analysis of the processed samples has been implemented by means of two main optical visualization systems developed in-house: 1) a fluidic operation analysis system using high speed video data to determine volumes, mixing efficiency and flow rates, and 2) a microscopy analysis system to investigate homogeneity and concentration of blood cells. Fluidic parameters were derived from the optical flow as well as color-based segmentation of the different fluids using a hue-saturation-value (HSV) color space. Cell count estimates were obtained using automated microscopy analysis and were compared to a widely accepted manual method for cell counting using a hemocytometer. The results using the first iteration microfluidic device showed that the most simple – and thus low-cost – approach for microfluidic component implementation was not adequate as compared to techniques based on manual cell counting principles. An improved microfluidic design has been developed to incorporate enhanced mixing and metering components, which together with this work provides the foundation on which to successfully implement automated, rapid and low-cost blood cell counting tests. DA - 2015-02 DB - ResearchSpace DP - CSIR KW - Point-of-care KW - Microfluidics KW - Blood cell counting KW - Fluidic analysis KW - Visualization pipeline LK - https://researchspace.csir.co.za PY - 2015 T1 - Sample to answer visualization pipeline for low-cost point-of-care blood cell counting TI - Sample to answer visualization pipeline for low-cost point-of-care blood cell counting UR - http://hdl.handle.net/10204/8047 ER - en_ZA


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